JOB and CYCLE scripts for reconstruction
Introduction :
For helping people to setup their jobs, I write two C shell scripts for running reconstruction jobs without manually interactive running individual programs. People can use them as a template to write their own scripts.
Scripts list:
Scripts explanation :
"cycle.csh" is the low level C shell scripts control the programs of each cycle. It requires input of cycle number and resolution. PFT input data files are in a pattern of NAMEOFMICROGRAPH.dat_NUM. The "NUM" in the suffix will add one as the output data file. This can be used as a control variable for cycling. The resolution can extended from very low resolution to high resolution step by step. Normally each resolution will need 3 to 5 cycles of PFT and EM3DR to let the refinement of the orientation become converged. "job.csh" is the high level C shell scripts which calls the "cycle.csh" and input the cycle number and the resolution to the "cycle.csh".
BUG REPORT :
If you meet any bugs or problems of the programs, please email xc@purdue.edu.