ROTBCRD
Function of the program :
Rotate the box coordinate file of RobEM It can also use the matrix and the the orientation data file of the high defocus image to generate the initial data file of the low defocus image.
Purpose of the program:
After obtain the matrix between the focal pair images, rotate the boxed coordinate file from the high defocus images to the boxed coordinate file for the low defocus images.
Usage of the program:
Input can be all read-in from the matrixfile or by input of options. The optional data_file is for generate low defocus inititial center and angle files for PFT search.
- Usage: rotbcrd [option] [matrixfile] [data_file_in] [data_file_out]
- Options:
- Example for ROTBCRD:
| Options | explanations |
|---|---|
| -p Phi | rotation angle in degree, default 0.0 |
| -x trans_X | translation X (column) in pixel, default 0.0 |
| -y trans_Y | translation Y (row) in pixel, default 0.0 |
| -s scale_factor | scale factor between two images, default 1.0 |
| -r edge_particle_file | read in the list of particle that is at the edge of the image which need to be remove from the coordinate file |
| -i input_bcrd | input bcrd file name, |
| -o output_bcrd | output bcrd file name |
| -h | print the help |
| rotate using the matrix file | rotbcrd matrix.1234 |
| rotate using the matrix file and generate data files | rotbcrd matrix.1234 1234.dat_00X 1233.dat_00X |
BUG REPORT :
If you meet any bugs or problems of the programs, please email xc@purdue.edu.